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Grape Vitis_vinifera GeneChip Exemplar: 1607001_at


Name

      

Date last modified
2004-11-29
Sequence Type
Consensus sequence
Probe Sets
Probe Sequences & Alignment

Probe sets from 1607001_at:
1. 1607001_at:  Expression Details  Probe-Level Intensity
 
BLAST and EST alignment
Plant Sequence BLAST

 1. BarleyBase Blast  2. NCBI BLAST  3. EBI BLAST 4. GrainGenes BLAST  5. Gramene BLAST  6. TAIR BLAST  

Annotation 
1. BEST BLASTX UniProt: Q676U1, Beta-tubulin Length = 450, Expect:0. match=430/450 aa. more

2. BEST BLASTN TIGR Grape Gene Index: TC45213, homologue to UP|TBB1_ARATH (P12411) Tubulin beta-1 chain, complete Length = 1651, Expect: 0, match=1605/1615. It may represent same contig. more

3. BEST TBLASTX Barley1 GeneChip Exemplar: Barley1_01508, Barley1_01508 Contig150. (45 members) from HarvEST Triticeae v.1.03 assembly 25 [Hordeum vulgare. (1919 letters), Expect= 0, match=384/408 aa.

4. BEST TBLASTX ATH1 GeneChip Exemplar: 262978_at, ; at|At1g75780; tubulin beta-1 chain identical toGB:P12411 GI:135442 from [Arabidopsis thaliana](Gene 6. (1), 87-102(1988). (1344 letters), Expect= 0, match=390/409 aa. more
 
BLAST Details

TBLASTX vs Barley1 Exemplars

#

Species

Subject Sequence Description

Expect

Identity/Match

Identity%

HSP
Details

1

barley

Barley1_01508: Contig150. (45 members) from HarvEST Triticeae v.1.03 assembly 25 [Hordeum vulgare. (1919 letters)

0

384/408

94

View

2

barley

Barley1_01507: Contig150. (165 members) from HarvEST Triticeaev. 1.03 assembly 25 [Hordeum vulgare. (1898 letters)

0

383/405

94

View

3

barley

Barley1_01503: Contig150. (50 members) from HarvEST Triticeae v.1.03 assembly 25 [Hordeum vulgare. (1868 letters)

0

382/410

93

View

4

barley

Barley1_01510: Contig151. (16 members) from HarvEST Triticeae v.1.03 assembly 25 [Hordeum vulgare. (1726 letters)

0

379/405

93

View

5

barley

Barley1_01509: Contig150. (61 members) from HarvEST Triticeae v.1.03 assembly 25 [Hordeum vulgare. (1794 letters)

0

377/405

93

View
Nucleotide Sequence
 
Total length: 1681

>1607001_at gb|CF404264; /DB_XREF=CSECS024B06_PREu0032 /CLONE=CSECS024B06
cccgcgaactcctccnnaaccaccatcaccaccaccactcaatttttggttttcgttttc
attttcattctcnccaaacacaaaaacgatgagggagatcttgcacgttcagggaggcca
atgcggtaaccaaattggatccaagttctgggaggtcatctgcgacgagcacggtgtgga
tcccactgggaggtacaacggagatggttcatctgatcttcagttggagaggatcaatgt
ctactacaatgaggcttctggtggaaggtacgttcccagggctgttctcanggatcttga
gcctgggactatggacagtatcagatcgggaccgtatgggcagatctttcgccctgataa
tttcgtttttggtcagtccggtgccggcaacaattgggccaagggtcattatactgaggg
ggcggagttgattgatgcggttctcgatgttgttcgcaaggaggctgagaattgtgattg
catgcaaggttttcaagtgtgccactcacttggaggaggcactggttctggcatggggac
cctcctgatatcaaagatgagagaggaatacccagatagaatgatgctcactttctccgt
cttcccatctncnaaggtctctgacacagttgtggagccatataatgccaccctctcggt
gcaccagttggtngngaatgctgacgaatgcatggttctggacaatgaggctctttatga
tatttgtttcaggactctcaagctcagcactcctagctttggtgacctgaaccacttgat
ctctgcgacnatgagtggggtgacttgctgcctgaggttccctggccagctgaactcaga
cctccgcaagctggctgtgaatctgatcccgttccctcgccttcatttctttatggtggg
ttttgcaccactcacctctcgtggatcccagcagtacatctccctcacagtgccagagct
aactcagcaaatgtgggatgccaagaacatgatgtgtgcggctgaccctcggcatggccg
ctacctgactgcctcggccatgttcaggggaaagatgagcaccaaggaggtggacgaaca
gatgatcaatgtgcaaaacaaaaactcgtcatattttgtggagtggattcctaataacgt
gaaatctagtgtgtgcgatattccaccaagaggtctgaagatggcatctacatttgtggg
gaactccacttcaatccaggagatgttcaggagggtgagcgagcagttcacagccatgtt
caggcgcaaggctttcttgcactggtatactggggaaggaatggatgagatggaattcac
ggaagcagagagcaacatgaatgatttggtgtcagaataccagcaataccaggatgcaac
tgctgatgacgagggtgagtatgaggagggcccagaagagaattatgaggcctaaaagcc
ttaaagcctaaataagattttgggagatgagcacctaagctttgcccatttatctgctac
tactatatgtggctgttanagtttcagatttatttccattttgcttgcagcttgtttgta
tcgtcacctggtttgaatcttctcttccataatataatgtttgtgggttgtgttcnannn
aaaaaaaaaaaaaannannnnnnaaannnnnnaaaaaaaaaaaaaaaaaaaaannnnnaa
a

 

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