Grape Vitis_vinifera GeneChip Exemplar: 1607001_at
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Name
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Date last modified
| 2004-11-29 |
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Sequence Type | Consensus sequence
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Probe Sets
| Probe Sequences & Alignment
Probe sets from 1607001_at: 1. 1607001_at: Expression Details Probe-Level Intensity |
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BLAST and EST alignment Plant Sequence BLAST | 1. BarleyBase Blast 2. NCBI BLAST 3. EBI BLAST 4. GrainGenes BLAST 5. Gramene BLAST 6. TAIR BLAST |
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Annotation | 1. BEST BLASTX UniProt: Q676U1, Beta-tubulin Length = 450, Expect:0. match=430/450 aa.
2. BEST BLASTN TIGR Grape Gene Index: TC45213, homologue to UP|TBB1_ARATH (P12411) Tubulin beta-1 chain, complete Length = 1651, Expect: 0, match=1605/1615. It may represent same contig. more
3. BEST TBLASTX Barley1 GeneChip Exemplar: Barley1_01508, Barley1_01508 Contig150. (45 members) from HarvEST Triticeae v.1.03 assembly 25 [Hordeum vulgare. (1919 letters), Expect= 0, match=384/408 aa. more
4. BEST TBLASTX ATH1 GeneChip Exemplar: 262978_at, ; at|At1g75780; tubulin beta-1 chain identical toGB:P12411 GI:135442 from [Arabidopsis thaliana](Gene 6. (1), 87-102(1988). (1344 letters), Expect= 0, match=390/409 aa. more . |
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BLAST Details |
BLASTN vs UniProt Releas 26 | # | Species | Subject Sequence Description | Expect | Identity/Match | Identity% | HSP Details | 1 | | Q676U1: Beta-tubulin Length = 450 | 0 | 430/450 | 95 | View | 2 | | TBB1_ARATH: (P12411) Tubulin beta-1 chain (Beta-1 tubulin) Length = 447 | 0 | 428/448 | 95 | View | 3 | | Q8GZ16: Putative tubulin beta-1 chain (At1g75780) Length = 447 | 0 | 426/448 | 95 | View | 4 | | TBB6_GOSHI: (Q6VAF6) Tubulin beta-6 chain (Beta-6 tubulin) Length = 450 | 0 | 425/449 | 94 | View | 5 | | Q65C77: Beta tubulin Length = 448 | 0 | 416/444 | 93 | View |
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Nucleotide Sequence | Total length: 1681 >1607001_at gb|CF404264; /DB_XREF=CSECS024B06_PREu0032 /CLONE=CSECS024B06 cccgcgaactcctccnnaaccaccatcaccaccaccactcaatttttggttttcgttttc attttcattctcnccaaacacaaaaacgatgagggagatcttgcacgttcagggaggcca atgcggtaaccaaattggatccaagttctgggaggtcatctgcgacgagcacggtgtgga tcccactgggaggtacaacggagatggttcatctgatcttcagttggagaggatcaatgt ctactacaatgaggcttctggtggaaggtacgttcccagggctgttctcanggatcttga gcctgggactatggacagtatcagatcgggaccgtatgggcagatctttcgccctgataa tttcgtttttggtcagtccggtgccggcaacaattgggccaagggtcattatactgaggg ggcggagttgattgatgcggttctcgatgttgttcgcaaggaggctgagaattgtgattg catgcaaggttttcaagtgtgccactcacttggaggaggcactggttctggcatggggac cctcctgatatcaaagatgagagaggaatacccagatagaatgatgctcactttctccgt cttcccatctncnaaggtctctgacacagttgtggagccatataatgccaccctctcggt gcaccagttggtngngaatgctgacgaatgcatggttctggacaatgaggctctttatga tatttgtttcaggactctcaagctcagcactcctagctttggtgacctgaaccacttgat ctctgcgacnatgagtggggtgacttgctgcctgaggttccctggccagctgaactcaga cctccgcaagctggctgtgaatctgatcccgttccctcgccttcatttctttatggtggg ttttgcaccactcacctctcgtggatcccagcagtacatctccctcacagtgccagagct aactcagcaaatgtgggatgccaagaacatgatgtgtgcggctgaccctcggcatggccg ctacctgactgcctcggccatgttcaggggaaagatgagcaccaaggaggtggacgaaca gatgatcaatgtgcaaaacaaaaactcgtcatattttgtggagtggattcctaataacgt gaaatctagtgtgtgcgatattccaccaagaggtctgaagatggcatctacatttgtggg gaactccacttcaatccaggagatgttcaggagggtgagcgagcagttcacagccatgtt caggcgcaaggctttcttgcactggtatactggggaaggaatggatgagatggaattcac ggaagcagagagcaacatgaatgatttggtgtcagaataccagcaataccaggatgcaac tgctgatgacgagggtgagtatgaggagggcccagaagagaattatgaggcctaaaagcc ttaaagcctaaataagattttgggagatgagcacctaagctttgcccatttatctgctac tactatatgtggctgttanagtttcagatttatttccattttgcttgcagcttgtttgta tcgtcacctggtttgaatcttctcttccataatataatgtttgtgggttgtgttcnannn aaaaaaaaaaaaaannannnnnnaaannnnnnaaaaaaaaaaaaaaaaaaaaannnnnaa a |