Grape Vitis_vinifera GeneChip Exemplar: 1607001_at
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Name
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Date last modified
| 2004-11-29 |
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Sequence Type
| Consensus sequence
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Probe Sets
| Probe Sequences & Alignment
Probe sets from 1607001_at:
1. 1607001_at: Expression Details Probe-Level Intensity
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BLAST and EST alignment
Plant Sequence BLAST | 1. BarleyBase Blast 2. NCBI BLAST 3. EBI BLAST 4. GrainGenes BLAST 5. Gramene BLAST 6. TAIR BLAST |
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| Annotation |
1. BEST BLASTX UniProt: Q676U1, Beta-tubulin Length = 450, Expect:0. match=430/450 aa. more
2. BEST BLASTN TIGR Grape Gene Index: TC45213, homologue to UP|TBB1_ARATH (P12411) Tubulin beta-1 chain, complete Length = 1651, Expect: 0, match=1605/1615. It may represent same contig. more
3. BEST TBLASTX Barley1 GeneChip Exemplar: Barley1_01508, Barley1_01508 Contig150. (45 members) from HarvEST Triticeae v.1.03 assembly 25 [Hordeum vulgare. (1919 letters), Expect= 0, match=384/408 aa. more
4. BEST TBLASTX ATH1 GeneChip Exemplar: 262978_at, ; at|At1g75780; tubulin beta-1 chain identical toGB:P12411 GI:135442 from [Arabidopsis thaliana](Gene 6. (1), 87-102(1988). (1344 letters), Expect= 0, match=390/409 aa.
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BLAST Details |
BLASTX vs ATH1 Exemplars | | # | Species | Subject Sequence Description | Expect | Identity/Match | Identity% | HSP
Details | | 1 | arabidopsis | 262978_at:at|At1g75780; tubulin beta-1 chain identical toGB:P12411 GI:135442 from [Arabidopsis thaliana](Gene 6. (1), 87-102(1988). (1344 letters) | 0 | 390/409 | 95 | View | | 2 | arabidopsis | 250317_at:at|At5g12250; tubulin beta-6 chai. (sp|P29514) ;supported by cDNA: gi_13430695_gb_AF360260.1_AF36026. (1350 letters) | 0 | 384/405 | 94 | View | | 3 | arabidopsis | 266295_at:at|At2g29550; tubulin beta-7 chain identical toGB:M84704;supported by full-length cDNA: Ceres:17240. (1350 letters) | 0 | 383/405 | 94 | View | | 4 | arabidopsis | 247442_s_at:at|At5g62690; tubulin beta-2/beta-3 chain(sp|P29512) ;supported by full-length cDNA: Ceres:39002. (1353 letters) | 0 | 382/408 | 93 | View | | 5 | arabidopsis | 261230_at:at|At1g20010; beta tubulin 1, putative similar toGB:AAD02498 from [Arabidopsis thaliana. (Plant Mol. Biol. 3. (1),171-17. (1999)); supported by cDNA: gi_13605518_gb_AF361585.1_AF36158. (1350 letters) | 0 | 381/404 | 94 | View |
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| Nucleotide Sequence |
Total length: 1681
>1607001_at gb|CF404264; /DB_XREF=CSECS024B06_PREu0032 /CLONE=CSECS024B06
cccgcgaactcctccnnaaccaccatcaccaccaccactcaatttttggttttcgttttc
attttcattctcnccaaacacaaaaacgatgagggagatcttgcacgttcagggaggcca
atgcggtaaccaaattggatccaagttctgggaggtcatctgcgacgagcacggtgtgga
tcccactgggaggtacaacggagatggttcatctgatcttcagttggagaggatcaatgt
ctactacaatgaggcttctggtggaaggtacgttcccagggctgttctcanggatcttga
gcctgggactatggacagtatcagatcgggaccgtatgggcagatctttcgccctgataa
tttcgtttttggtcagtccggtgccggcaacaattgggccaagggtcattatactgaggg
ggcggagttgattgatgcggttctcgatgttgttcgcaaggaggctgagaattgtgattg
catgcaaggttttcaagtgtgccactcacttggaggaggcactggttctggcatggggac
cctcctgatatcaaagatgagagaggaatacccagatagaatgatgctcactttctccgt
cttcccatctncnaaggtctctgacacagttgtggagccatataatgccaccctctcggt
gcaccagttggtngngaatgctgacgaatgcatggttctggacaatgaggctctttatga
tatttgtttcaggactctcaagctcagcactcctagctttggtgacctgaaccacttgat
ctctgcgacnatgagtggggtgacttgctgcctgaggttccctggccagctgaactcaga
cctccgcaagctggctgtgaatctgatcccgttccctcgccttcatttctttatggtggg
ttttgcaccactcacctctcgtggatcccagcagtacatctccctcacagtgccagagct
aactcagcaaatgtgggatgccaagaacatgatgtgtgcggctgaccctcggcatggccg
ctacctgactgcctcggccatgttcaggggaaagatgagcaccaaggaggtggacgaaca
gatgatcaatgtgcaaaacaaaaactcgtcatattttgtggagtggattcctaataacgt
gaaatctagtgtgtgcgatattccaccaagaggtctgaagatggcatctacatttgtggg
gaactccacttcaatccaggagatgttcaggagggtgagcgagcagttcacagccatgtt
caggcgcaaggctttcttgcactggtatactggggaaggaatggatgagatggaattcac
ggaagcagagagcaacatgaatgatttggtgtcagaataccagcaataccaggatgcaac
tgctgatgacgagggtgagtatgaggagggcccagaagagaattatgaggcctaaaagcc
ttaaagcctaaataagattttgggagatgagcacctaagctttgcccatttatctgctac
tactatatgtggctgttanagtttcagatttatttccattttgcttgcagcttgtttgta
tcgtcacctggtttgaatcttctcttccataatataatgtttgtgggttgtgttcnannn
aaaaaaaaaaaaaannannnnnnaaannnnnnaaaaaaaaaaaaaaaaaaaaannnnnaa
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