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Arabidopsis thaliana gene expression after 6 days in shoot induction medium | |||||||||||
| Experiment Name: | Arabidopsis thaliana gene expression after 6 days in shoot induction medium | ||||||||||
| Accession No. & GeneChip: | AT10, ATH1-121501 | ||||||||||
| Submitter: | Experimenter: Rhonda DeCook, submitted by Rhonda DeCook | ||||||||||
| Experiment Type: | strain or line | ||||||||||
| Experiment Factor: | genetic line | ||||||||||
| Number of Replicates: | 1 | ||||||||||
| Quality Control Steps: | None | ||||||||||
| Quality Control Description: | None | ||||||||||
| Publication_id: | In press - Genetics. | ||||||||||
| Last Update Time: | 2005-11-28 09:16:01 | ||||||||||
| Expression Data Access & Analysis: | Please select one action: 1. Batch download all data files at Download Center . 2. Browse Hybridizations and boxplots from experiment. 3. Visualization of hybridizations or treatment means with scatterplots and MvA plots. 4. Browse Samples from experiment. 5. Create Gene List by filter probe sets for differentially-expressed genes. 6. Pattern Recognition on filtered gene list. | ||||||||||
| Description: | Plant material for RNA extraction was collected 6 days after transferring Arabidopsis thaliana root segments to shoot induction medium. Root explants from several hundred seedlings for each of 30 recombinant inbred lines (RIL) were pooled for RNA extraction (resulting in one CEL file for each RIL). RNA extraction and hybridization to Affymetrix ATH1 oligonucleotide arrays were carried out as described in CHE et al. (2002) except, GeneChip Scanner 3000 was used for scanning the chips and the image data generated from the scans was converted to numerical data using GeneChip Operating System v 1.0. | ||||||||||
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