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NSF 20K Rice Oligo Array Element: TRA2_00100
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Name
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Date last modified
| 2005-01-12 |
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Sequence Origin & Oligomer
Provided by NSF Rice Oligonucleotide Array Project
| From Gene Model 9629.m00180 (2010 bases)
Oligomer Coordinates: 5' 678 - 742 3' base; Tm: 75.84; GC%: 44.62
Oligo_Sequence:
GCCGTCAAATTTCCTACATATGGAGGACCTTGGACTACTTGGTATGGTCTCATCAAAGATTGCCT
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Expression
| Expression Data to Be Added Soon |
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Genomic Alignment with
Rice and Cereals |
Rice Genome Alignment at Gramene will be available soon
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BLAST and EST alignment
Plant Sequence BLAST | 1. BarleyBase Blast 2. NCBI BLAST 3. EBI BLAST 4. GrainGenes BLAST 5. Gramene BLAST 6. TAIR BLAST |
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| Annotation |
1. receptor-like kinase
2. BEST BLASTN TIGR Rice Gene Index 16: TC264372, homologue to UP|Q7F3X2 (Q7F3X2) Receptor-like kinase, partial (87%) Length = 2498, Expect: 0, match=1137/1139. It may represent same contig. more
3. BEST TBLASTX Barley1 GeneChip Exemplar: Barley1_26659, Contig26659 (1 member:AF085166) from HarvEST Triticeae v. 1.03 assembly 25 [Hordeum vulgare] Length = 2022, Expect= 0, match=279/367 aa. more
4. BEST TBLASTX ATH1 GeneChip Exemplar: 249553_at, ; at|At5g38260; receptor serine/threonine protein kinase - like receptor serine/threonine kinase PR5K, Arabidopsis thaliana, EMBL:AT48698 Length = 1917, Expect= 2e-81, match=207/611 aa. more
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| Gene Model cDNA and Predicted Protein Sequences |
Total length: 2010
>TRA2_00100 from Gene Model 9629.m00180 receptor-like kinase
ATGGAAGCAGCTGCTTTGTCGACCGTCCTGTGTGTGCTCGCACTTGTGGTAGCGGATGCA
GATCATCACGTCGTCCATGTCCAAGGACGACGGCATCGTCAGTGCCAACCTTTCTCCTGC
GGCCATCTCTCAAACATAACTCATCCTTTTCGCCGGCGAGGCGACCCTCGCAGGTGCGGC
GTCTCGTCGTACGAGCTAGACTGCAGCAGCGATGATGGCAAGGCCACCATTCGGATCAAC
ACAGGGAAATACTATGTGAGTAGCATCGACTACACTGCTTCCATCTTTTGGGTCGTCGAC
GCCAACCTGCAGGATGATGCAAACAGCAGCTGCCCTCTTCCTCGCTCGGACCAGCTGCCT
TACGTTGGTCTGGGTATCCCAGGATCACACGACAGCTGGGACTTGGGCCTTGATGATATG
ATTACTTGGGTCGGCTTTGTCAATTGTTCGCAGGAACTAATTACGAACAGTAGTAGCAAA
TACCAGCCCATGAATTGCCTGACCACGACTTCGTCCTACGTTTATTATATGCTCCCATCG
TTTGGAGCACCATCTATCCAAGACATCGAACCTTCTTGTGGATACTTGGCCATGACTCCT
ATCGGCGGTGGCAGTAACGGTAACAGCATTAATCTGTCCGAATATGAAGATGTTGTAAAA
TCCATGAGGGGTGGATTTGCCGTCAAATTTCCTACATATGGAGGACCTTGGACTACTTGG
TATGGTCTCATCAAAGATTGCCTCAACGAGTCTGTTAGCTTAGCTGATAGCCATGACAAT
CCATTACCCAGAGTAGGCATCAAAGACCGGATCATTGACATCCTTTCTATTGACCTCCGT
TTCTGGGGATGCATGATAGGCATATCCAGACGGTTTGTGTTCGCACCGTTGGTCGTGATG
ATTTTTCTTACTCGCAAGTACTGGAAAACAAGGATTGCAATTGATGCAGTCGAAAAGTTC
CTTCGGATGCAAGATATGCTAGGCCCCAAGAGGTACGCCTACACGGACATCATAGCAATC
ACAAGCCATTTCAGAGACAAGCTGGGCCAAGGAGGATATGGGTCTGTGTACAAGGGTGTG
TTTCTCCCGGGTGATGTTCATGTCGCCATCAAGATGTTGGATGGCAACTCCAATTGCAAT
GGAGAAGACTTCATTAGTGAAGTTGCCACCATAGGCAGGATCCATCACATCAACGTGGTG
CGTCTTGTGGGGTTCTGCTCCGAAGAAATGAGAAGGGCCTTGGTTTACGAATACATGCCT
AGAGGATCTCTAAACAAGTATATCTTCTCATCCGAGAGAAGCTTCTCTTGGGACAAGCTC
AATGAGATTGCTCTGGGCATTGCTAGAGGGATCAACTACCTGCATCAGGGGTGCGAGATG
CAGATTCTACACTTTGATATCAAGCCAGACAACATCCTTCTTGATGATAACTTTGTTCCA
AAGGTTGCTGATTTCGGCCTCGCAAAACTGTACCCAAGGGAGAAGAGCTTTGTGTCAGAT
AGGGCTTTACGGGGAACAGTAGGTTATATGGCTCCTGAGATGGTATCCCGGAGCTTTGGC
GTTATATCTGACAAATCCGATGTTTATAGCTTTGGAATGTTGTTGCTTGAGATGGCTGGA
GGTAGAAGGAATGCAGATCCAAATGCAAACTCAAATGCAAGCAGGGCATACTACCCAGCA
TGGGTGTATGACCAGCTGATAGCAGATCAACAAGTTGATGAGATATCCAATGTTGCTGAC
ATGCATGAGCTGGAGAGGAAGCTATGCCTTGTTGGGCTGTGGTGCATTCAGATGAAATCA
CACGATCGCCTGACGATGAGCGAGGCAATAGAGATGCTCGAAGGGGGTGTGGATGCGCTG
CAAGTGCCTCCGAGACCATTTTTCTGCGATGGGGATGGCATTGGCAATGGCATGCCACCT
CCACAAGTCATGGATTCTTACTTTCACTCCTCCGAGCTTACTGCAATTTCAGAAGAGGAC
GATGGAATATCTGAATTAGCCAGTAGCTAG
Protein Prediction length: 670
MEAAALSTVLCVLALVVADADHHVVHVQGRRHRQCQPFSCGHLSNITHPFRRRGDPRRCG
VSSYELDCSSDDGKATIRINTGKYYVSSIDYTASIFWVVDANLQDDANSSCPLPRSDQLP
YVGLGIPGSHDSWDLGLDDMITWVGFVNCSQELITNSSSKYQPMNCLTTTSSYVYYMLPS
FGAPSIQDIEPSCGYLAMTPIGGGSNGNSINLSEYEDVVKSMRGGFAVKFPTYGGPWTTW
YGLIKDCLNESVSLADSHDNPLPRVGIKDRIIDILSIDLRFWGCMIGISRRFVFAPLVVM
IFLTRKYWKTRIAIDAVEKFLRMQDMLGPKRYAYTDIIAITSHFRDKLGQGGYGSVYKGV
FLPGDVHVAIKMLDGNSNCNGEDFISEVATIGRIHHINVVRLVGFCSEEMRRALVYEYMP
RGSLNKYIFSSERSFSWDKLNEIALGIARGINYLHQGCEMQILHFDIKPDNILLDDNFVP
KVADFGLAKLYPREKSFVSDRALRGTVGYMAPEMVSRSFGVISDKSDVYSFGMLLLEMAG
GRRNADPNANSNASRAYYPAWVYDQLIADQQVDEISNVADMHELERKLCLVGLWCIQMKS
HDRLTMSEAIEMLEGGVDALQVPPRPFFCDGDGIGNGMPPPQVMDSYFHSSELTAISEED
DGISELASS*
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