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NSF 58K Maize Oligo Array Element: MZ00000002


Name

      

Date last modified
2005-02-11
Oligo Sequence Names and Origin
NSF Maize Oligonucleotide Array Project
  		TIGR Oligo ID: TM00000002; Operon ID: MZ00000002; Derived from sequence: AZM4_123638.
Expression
  Expression Data to Be Added Soon   
Genomic Alignment with
Rice and Cereals
Genome Alignment at Gramene and MaizeGDB will be available soon
 
BLAST and EST alignment
Plant Sequence BLAST

 1. BarleyBase Blast  2. NCBI BLAST  3. EBI BLAST 4. GrainGenes BLAST  5. Gramene BLAST  6. TAIR BLAST  

Annotation 
1. Tentative annotation: putative OsNAC7 protein {Oryza sativa (japonica cultivar-group);} ^|^GB|BAD09451.1|42408297|AP004562 putative OsNAC7 protein {Oryza sativa (japonica c
Top_NRAA_Hit: GB|BAD10567.1|42409305|AP005657 
Match_Rice_Model: 9636.m00130;9634.m00322;9630.m04121

2. BEST BLASTN TIGR Maize Gene Index 15: CO518488, Length = 562, Expect:0, match=408/408. It may represent same contig. more

3. BEST TBLASTX Barley1 GeneChip Exemplar: Barley1_19673, Contig19673 (3 members) from HarvEST Triticeae v. 1.03 assembly 25 [Hordeum vulgare] Length = 919, Expect= 0, match=139/141 aa. more

4. BEST TBLASTX ATH1 GeneChip Exemplar: 266714_at, ; at|At2g46770; NAM (no apical meristem)-like protein Length = 1200, Expect= 5e-93, match=129/141 aa. more

5. BEST BLASTN CornChip0 GeneChip Exemplar:
 
Original Sequence
 
Total length: 1258
>MZ00000002 TM00000002 putative OsNAC7 protein {Oryza sativa (japonica cultivar-group);} ^|^GB|BAD09451.1|42408297|AP004562 putative OsNAC7 protein {Oryza sativa (japonica c
ATGAGCATCTCGGTGAACGGGCAGTCGTGCGtgccgccggggttccgcttccaccccacg
gaggaggagctgctcaactactacctccgcaagaaggtggcctcccaggagatcgacctc
gacgtcatccgcgacgtcgacctcaacaagctcgagccatgggacATCCAAGAGAAATGC
AAGATCGGGTCGGGTCCCCAGaacgactggtacttcttcagccacaaggacaagaagtac
ccgacggggacgcgcaccaaccgcgccacggccgccgggttctggaaggccaccggccgc
gacaaggccatctacaacgccgtcaagcgcatcggcatgcgcaagacgctcgtcttctac
aagggccgcgcgccgcacggccagaagtccgactggatcatgcacgagtaccgcctcgac
gaccccgctgctgctgctgctgctggatccggtgatgccgtggccaacgacgacgcagcc
gccacGgctgctgctgctgccgccgcgtcgTCGGACGGCGggcaggaggacggctgggtg
gtgtgcagggtgttcaagaagaagcaccaccacaaggagtcAggtgggggcgggggcaac
aagcacggcagcagtaacagcgagcatgggcacggcggcgccggcaaggCATCGGCTGCG
GCTGCGGCTGCGGCGCACCAGCACCAGCACCATGGAGGCCTGCAGTACTCCTCCAGCGAC
GAGGCGCTGGACCAGATCCTGCAGTACATGGGCAGGTCGTGCAAGCAGGAGCACGAGCTG
GTGTCGCCGGCGCCGGCGCCGCCGGGACGGGCGGCGGCGTCCAGGTACCTCCGGCCCATC
GAGACCGTTCTGGGCGGGCACGCGTTCATGAAGCTTCCCGCGCTCGAGAGCCCGTCCGCG
GCCGCGTCCGCATCGCTGACACAGCCGGCGCAGCACGACGAGCTCTACCGCGCCGCCGGG
AACGGGATCACGGACTGGGCCATGATGGACCGGCTGGTGGCGTCGCACCTGAACGGGCAG
CAGGCGcccgccgcggcggaccagctcggcggcggctgcggcttcgacgcggacgccggc
gccgaagacgcggacgccggcctcgccTTCTACTCCGCCGCCGCCAGCCGGCTGCTcggc
tccggcggcggcgccggcagcgacgacgacctgtggagcttcacgcggtcgtcggtttcg
tcaacggcggcggcggcggccacgtccacGGAGCGGCTCAGCCACGTGTCACTGTAG>

 
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