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Sample Information
Step 1. Select an Experiment:
Please choose Species/Platform/Experiment
1. TA1: Wheat--Rehybridization of Wheat and Barley cRNAs to the Affymetrix Wheat Genome Ar...
2. TA2: Wheat--Wheat GeneChip Test
3. OS1: Rice--Rice 57K Affymetrix GeneChip Test
4. ZM1: CornChip0--Maize Pilot GeneChip Array
5. BB1: Barley1--Cross-species Detection in Barley1 GeneChip Array
6. BB4: Barley1--Mla-specified Transcriptional Responses in Barley-Powdery Mildew Interactio...
7. BB5: Barley1--A Ca2+/calmodulin-dependent protein kinase required for symbiotic nodule de...
8. BB7: Barley1--mlo5-mediated resistance responses in barley
9. BB8: Barley1--Microarray of barley genes in wheat-barley chromosome addition lines
10. AT4: ATH1--Arabidopsis thaliana gene expression during floral transition and early fl...
11. AT5: ATH1--Arabidopsis gene expression atlas across developmental time
12. AT6: ATH1--Loss of a callose synthase results in salicylic acid-dependent disease resi...
13. AT8: ATH1--Expression analysis of Arabidopsis suspension cells during sucrose starvati...
14. AT10: ATH1--Arabidopsis thaliana gene expression after 6 days in shoot induction medium
15. AT11: ATH1--Transcriptome analysis of glyoxylate cycle knock-out mutants in early stage...
16. AT12: ATH1--Gene expression and carbohydrate metabolism through the diurnal cycle
17. AT13: ATH1--Impact of Type III effectors on plant defense responses
18. AT14: ATH1--Genes affected by hog1 alleviation of CHS silencing
19. AT15: ATH1--Analysis of anther development by analysing downstream genes controlled by ...
20. AT16: ATH1--Carbohydrate- and redox-regulation of gene expression in a TPT mutant
21. AT17: ATH1--Indole acetic acid treatment-dose response and time course
22. AT18: ATH1--The mechanisms involved in the interplay between dormancy and secondary gro...
23. AT19: ATH1--The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress respon...
24. AT20: ATH1--The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress respon...
25. AT23: ATH1--AtGenExpress: Pseudomonas half leaf injection
26. AT7: AG--The Transcriptional Innate Immune Response to flg22-Interplay and Overlap w...
Step 2. Select a Sample:
1. 1. BB1_S1, T=1, R=1, species=Barley
2. 2. BB1_S2, T=1, R=2, species=Barley
3. 3. BB1_S3, T=2, R=1, species=Wheat
4. 4. BB1_S4, T=2, R=2, species=Wheat
5. 5. BB1_S5, T=3, R=1, species=Oat
6. 6. BB1_S6, T=3, R=2, species=Oat
7. 7. BB1_S7, T=4, R=1, species=Sorghum
8. 8. BB1_S8, T=4, R=2, species=Sorghum
9. 9. BB1_S9, T=5, R=1, species=Corn
10. 10. BB1_S10, T=5, R=2, species=Corn
11. 11. BB1_S11, T=6, R=1, species=Rice
12. 12. BB1_S12, T=6, R=2, species=Rice
T: Treatment; R: Replicate
*
Sample name:
Expt# 11666-10
*
Organism:
Hordeum vulgare
Sample type:
leaf
Development stage:
* 02-seedling growth (GRO:0007058)
* 2.02-first leaf unfolded (GRO:0007060)
Organism part:
plant anatomy ontology (PO:0009011)
whole plant (PO:0009011) (PO:0009011)
* leaf (GRO:0005306)
* first leaf (GRO:0005118)
Age:
single
range
Min:7
Max:7
Unit:days
Initial time point:
Genetic variation:
wild type
Individual indentifier:
CI 16151
Individual genetic trait genotype:
Mla 6
Separation technique:
trimming
Sampling date (MM/DD/YYYY):
04/16/2003
Sample preparation date (MM/DD/YYYY):
04/28/2003
Hybridization date (MM/DD/YYYY):
05/18/2003
Cell type or target cell type:
Treatment application type:
Sample treatment protocol:
In vitro or in vivo treatment:
----------------------------------------
Growth Condition ------------------------------------------
Growth time:
single
range
Min:7
Max:7
Unit:days
Growth temperature in oC:
single
range
Min:25
Max:30
Growth media:
Description:
Seedlings were grown in the greenhouse for 7 days.
----------------------------------------
Sample provider information ------------------------------------------
Same as experiment submitter
Different from experiment submitter
Name:
Rico Caldo
E-mail:
racaldo@iastate.edu
Institution:
Iowa State University
Head of lab:
Roger P Wise
Telephone:
515-294-2893
URL
www.wiselab.org
----------------------------------------
Protocol binding ------------------------------------------
*
Extract protocol:
Hot Phenol/Guanidine Thiocyanate and RNeasy Clean up
*
Labeling protocol:
Affy-Eukaryotic Target Preparation
*
Hybridization protocol:
Affy- Eukaryotic Target Hybridization
*
Scanning protocol:
Affy- Array Scanning
*
Washing and staining procedure:
Affy- Eukaryotic Array Washing and Staining
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