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FuncExpression GO2Expression -- Gene Ontology to Gene List and Expression
Method 1. Search GO Terms whose Names Contains:
Method 2. Select GO terms from GO tree, click a folder icon to view/hide its child terms. Click checkboxes to select terms
Gene Ontology:
molecular_function
(GO:0003674)
ATH1: 21986, Barley1:9706
biological_process
(GO:0008150)
ATH1: 21643, Barley1:7846
cellular_component
(GO:0005575)
ATH1: 21464, Barley1:4373
Create Gene List for Selected GO Classes
Selected GO Terms for Creating Gene List:
Select Experiment and Estimation for Output:
Experiment:
Please choose Species/Platform/Experiment
1. TA1: Wheat--Rehybridization of Wheat and Barley cRNAs to the Affymetrix Wheat Genome Ar...
2. TA2: Wheat--Wheat GeneChip Test
3. OS1: Rice--Rice 57K Affymetrix GeneChip Test
4. OS2: Rice--Comparative Transcriptional Profiling of Two Contrasting Rice Genotypes und...
5. VV2: Grape--Long-term Salt & Water Stess in Grapes
6. FG1: Fusarium--Fusarium transcript detection on Morex barley spikes using Fusarium Affy Ge...
7. FG2: Fusarium--Expression Profiles in Carbon and Nitrogen Starvation Conditions
8. FG4: Fusarium--Fusarium/Barley RNA dilution
9. ZM1: CornChip0--Maize Pilot GeneChip Array
10. BB1: Barley1--Cross-species Detection in Barley1 GeneChip Array
11. BB2: Barley1--Expression profiling of wild type and mutants of Sultan 5 (Mla12) barley c...
12. BB3: Barley1--Transcription patterns during barley development
13. BB4: Barley1--Mla-specified Transcriptional Responses in Barley-Powdery Mildew Interactio...
14. BB5: Barley1--A Ca2+/calmodulin-dependent protein kinase required for symbiotic nodule de...
15. BB7: Barley1--mlo5-mediated resistance responses in barley
16. BB8: Barley1--Microarray of barley genes in wheat-barley chromosome addition lines
17. BB9: Barley1--Barley cv Morex inoculated with Fusarium graminearum and water as mock cont...
18. BB16: Barley1--Steptoe x Morex seedling leaf comparison
19. AT4: ATH1--Arabidopsis thaliana gene expression during floral transition and early fl...
20. AT5: ATH1--Arabidopsis gene expression atlas across developmental time
21. AT6: ATH1--Loss of a callose synthase results in salicylic acid-dependent disease resi...
22. AT8: ATH1--Expression analysis of Arabidopsis suspension cells during sucrose starvati...
23. AT10: ATH1--Arabidopsis thaliana gene expression after 6 days in shoot induction medium
24. AT11: ATH1--Transcriptome analysis of glyoxylate cycle knock-out mutants in early stage...
25. AT12: ATH1--Gene expression and carbohydrate metabolism through the diurnal cycle
26. AT13: ATH1--Impact of Type III effectors on plant defense responses
27. AT14: ATH1--Genes affected by hog1 alleviation of CHS silencing
28. AT15: ATH1--Analysis of anther development by analysing downstream genes controlled by ...
29. AT16: ATH1--Carbohydrate- and redox-regulation of gene expression in a TPT mutant
30. AT17: ATH1--Indole acetic acid treatment-dose response and time course
31. AT18: ATH1--The mechanisms involved in the interplay between dormancy and secondary gro...
32. AT19: ATH1--The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress respon...
33. AT20: ATH1--The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress respon...
34. AT23: ATH1--AtGenExpress: Pseudomonas half leaf injection
35. AT26: ATH1--3-week old Arabidopsis Col-0 and pmr4 plants were infected with Erysiphe ci...
36. AT27: ATH1--Erysiphe orontii infection, 7 dpi
37. AT28: ATH1--Erysiphe orontii infection, 5 dpi
38. AT29: ATH1--Comparison of Col wild-type and mutant sid2-2 (eds16) responses to Erysiphe...
39. AT30: ATH1--Response to Erysiphe orontii infection, time course experiment
40. AT7: AG--The Transcriptional Innate Immune Response to flg22-Interplay and Overlap w...
41. FG3: --Cross-species hybridization
Estimation:
1. RMA-Robust Multi-Chip Average
2. Affymetrix MAS5.0 Suite Estimation
*ATH1 and Barley1 GeneChips are supported. More GeneChips are being added.
*Gene Ontology is developed by Gene Ontology Consortium
Current version: 200407.
*Arabidopsis GO annotation is TAIR's version 20050507 from GO Annotation Download.
*Barley1 GeneChip exemplar GO annotation is done by BarleyBase based on sequence similarity to UniProt entries and GOA annotation.
*Shown to the right side of each node are the total numbers of GeneChip exemplars matching that GO node. It may execeed the sum of matchings in its descedent nodes due to difference in GO annotation details.
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