Hello! Guest! Please Login or Register! Log Out

Cornchip0 Pilot GeneChip Exemplar: Zm3.246.1.A1_at


Name

      

Date last modified
2004-11-29
Sequence Type
EST from Zm3.246.1.A1_at
Probe Sets
Probe Sequences & Alignment

Probe sets from Zm3.246.1.A1_at:
1. Zm3.246.1.A1_at:  Expression Details  Probe-Level Intensity
 
Rice Genome AlignmentGenome Alignment at Gramene

On the Gramene entry page, under the "Location of hits" section, select one of the locations to go to the genome browser (ContigView) page, then under "Detailed view" section, select "arrays" menu and check the platforms to be displayed.
BLAST and EST alignment
Plant Sequence BLAST

 1. BarleyBase Blast  2. NCBI BLAST  3. EBI BLAST 4. GrainGenes BLAST  5. Gramene BLAST  6. TAIR BLAST  

Annotation 
1. BEST BLASTX UniProt: Q9ZP60_MAIZE, (Q9ZP60) GST7 protein (EC 2.5.1.18) Length = 227, Expect:1e-75. match=136/136 aa. more

2. BEST BLASTN TIGR Maize Gene Index: TC250686, UP|Q9ZP60 (Q9ZP60) GST7 protein , complete Length = 940, Expect: 0, match=508/510. It may represent same contig. more

3. BEST TBLASTX Barley1 GeneChip Exemplar: Barley1_15264, Contig15264 (6 members) from HarvEST Triticeae v. 1.03 assembly 25 [Hordeum vulgare] Length = 1015, Expect= 8e-47, match=70/128 aa. more

4. BEST TBLASTX ATH1 GeneChip Exemplar: 259040_at, ; at|At3g09270; putative glutathione transferase similar to glutathione transferase GB:CAA71784 [Glycine max];supported by full-length cDNA: Ceres:21546. Length = 675, Expect= 9e-29, match=49/117 aa. more

5. BEST BLASTN Maize 18K GeneChip Exemplar: Zm.246.1.A1_at, Zm3.246.1.A1_a. (510 letters), Expect= 0, match=508/510 base. more

6. BEST BLASTN Maize 58K Oligo Array Element: MZ00015249, TC222001 Length = 940, Expect= 0, match=508/510 base. more
 
Nucleotide Sequence
 
Total length: 510

>Zm3.246.1.A1_at Zm3.246.1.A1_at
GTGCCGTCGCCCGTTTCTGGGCGAACTTCTTGGACACCAAGTTCTCCCAGCCGTTCTGGC
TGGCGTACTGGGCGGAGGGCGAGGCGCAGAAGGCCGTGGTGAAGGAGGCCAAGGAGAACC
TGGCGCTCCTGGAGGCGCAGCTCGGCGGGAAGAGCTTCTTCGGCGGCGACACGCCCGGGT
ACCTCGACATAGCCGCGTGCGCGTTGGGTCCTTGGATCGGCGTGCTCGAGGAGGTGACTG
GAGTGGCCTTGCTGGACGCCGACGAGTTCCCCGCTCTATGCCAGTGGGCCAGGGACTACA
GCTCCAGTGAAGCGCTCAGGCCATGCCTGCCGGACAGGGACCGACTCGTTGCCTACTTCA
CCGAGAACAAGGAGAAGTACAAGACATTTGCCAAGGCAACGTTGCATCAGTAGCTGCTAG
TTGGGTGCAAACCGCTTGTTTATCTCTGTGTGGAATAATGTATACGTACGTGCTCCCTCG
ATATCAAATAAATCAGCTACCGGAGTTGAC

 

Copyright@2001-2005 The BarleyBase Group
All rights reserved.

For problems with the webpages, contact barleybasewebmaster