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Barley1 GeneChip Exemplar: Barley1_18184


Name

      

Date last modified
2004-12-04
Sequence Type
Exemplar
Probe Sets
Probe Sequences & Alignment

Probe sets from Barley1_18184:
1. Contig18184_at:  Expression Details  Probe-Level Intensity
 
Genomic Alignment with
Rice and Cereals
Genome Alignment at Gramene
On the Gramene rice genome browse page, check the "Barley1_Exemplar_GeneChip" box from "EST" menu to make it a default view option.
 
BLAST and EST alignment
Plant Sequence BLAST

1. PlantGDB  2. BarleyBase Blast 3. NCBI BLAST  4. GrainGenes BLAST on Mapped Wheat Ests etc 5. Gramene BLAST  6. EBI BLAST 7. TAIR BLAST  

Annotation 
1. BEST BLASTX UniProt: UFOG_HORVU, (P14726) Flavonol 3-O-glucosyltransferase (EC 2.4.1.91) (UDP-glucose flavonoid 3-O-glucosyltransferase) (Bronze-1) Length = 455, Expect:0. match=289/309 aa. more

2. BEST BLASTX NR: AAO43975.1, UDPglucose:flavonoid-3-oxy glucosyl transferase [Zea mays] , Expect:0.

3. BEST BLASTX PLANTS: 10/14/03 1. sp|P14726 0 UFOG_HORVU Flavonol 3-O-glucosyltransferase (UDP-glucose flavonoid 3-O-glucosyltransferase) (Bronze-1) Length = 455; 2. emb|CAA33729.1 0 UDPglucose flavonol 3,0 glucosyl transferase [Hordeum vulgare subsp. vulg more

4. BEST BLASTN TIGR Barley Gene Index: TC136710, homologue to UP|UFOG_HORVU (P14726) Flavonol 3-O-glucosyltransferase (UDP-glucose flavonoid 3-O-glucosyltransferase) (Bronze-1) , partial (59%) Length = 884, Expect: 1452, match=884/884. It may represent same contig. more

5. BEST TBLASTX ATH1 GeneChip Exemplar: 246468_at, ; at|At5g17050; UDP glucose:flavonoid 3-o-glucosyltransferase -like protein UDP glucose:flavonoid 3-o-glucosyltransferase, Vitis vinifera, EMBL:AF000372 Length = 1383, Expect= 2e-81, match=43/66 aa. more

Barley1 exemplars and BEST BLASTX NR results are kindly provided by Dr. Timothy Close from  HarvEST:Barley. BLASTX NR is based on contig assembly #31, and other BLASTs are based on contig assembly #25 from HarvEST:Barley.

     up to 5 BLAST top hits for all types of BLASTs.
Nucleotide Sequence
 
Total length: 1452

>Barley1_18184
TGGCGCCCCCGCCGCCGCACATCGCCGTGGTGGCCTTCCCCTTCAGCTCCCACGCGGCCG
TGCTCTTCTCGTTCGCGCGCGCCCTCGCCGCCGCCGCGCCGGCCGGGACGAGCCTCTCGT
TCCTCACCACCGCCGACAACGCCGCCCAGCTCCGCAAGGCCGGCGCGCTCCCCGGCAACC
TGCGCTTCGTCGAGGTCCCGGACGGGGTGCCGCCGGGCGAGACGTCGTGCCTGTCGCCTC
CGCGCCGGATGGATCTCTTCATGGCGGCGGCCGAGGCCGGCGGGGTCAGGGTCGGGCTCG
AGGCGGCATGCGCCTCCGCCGGTGGCGCCAGGGTGAGCTGCGTCGTCGGGGACGCGTTCG
TCTGGACCGCGGACGCGGCCTCCGCTGCCGGGGCGCCGTGGGTGGCCGTCTGGACCGCCG
CTTCCTGCGCCCTCCTCGCGCACCTCCGCACCGACGCGCTCCGCCGGGACGTCGGCGATC
AGGCGCCAGCCGAGCCGACGAGCTGCTGGTCGCGCACGCCGGCCTCGGCGGCTACCGCGT
CCGGGACCTCCCCGACGGCGTCGTCTCCGGCGACTTCAACTACGTCATCAGCCTCCTGGT
CCACCGCCAGGCGCAGCGCCTTCCTAAAGCGGCCACGGCCGTCGCCCTCAACACCTTCCC
GGGCCTCGACCCGCCCGACCTCACCGCCGCCCTCGCCGCCGAGCTCCCGAACTGCCAGCC
CCTCGGCCCCTACCACCTCCTCCCGGGCGCAGAGCCCACAGCAGACACCAACGAAGCGCC
AGCCGACCCGCACGGCTGCCTCGCCTGGCTCGACCGCCGGCCCGCGCGGTCCGTCGCGTA
CGTCAGCTTCGGCACGAACGCCACGGCGCGGCCGGACGAGCTGCAGGAGCTCGCGGCCGG
GCTGGAGGCGAGCGGCGCGCCGTTCCTGTGGTCGCTGCGCGAGGAGTCGTGGCCGCTGCT
CCCGCCGGGGTTCCTGGAGCGCGCGCCGGGCCTCGTGGTGCCGTGGGCGCCGCAGGTGGG
CGTGCTGCGGCACGCCGCGGTCGGCGCGTTCGTGACGCACGCCGGGTGGGCGTCGGTGAT
GGAGGGAGTGTCCAGCGGCGTGCCCATGGCGTGCCGGCCCTTCTTCGGCGACCAGACGAT
GAACGCGCGGTCGGTGGCCAGTGTGTGGGGCTTCGGCACGGCGTTCGACGGGCCGATGAC
GCGCGGCGCCGTGGCAAACGCGGTGGCGACGCTGCTGCGCGGGGAGGATGGGGAGCGGAT
GAGGGCAAAGGCGCAGGAGCTGCAGGCCATGGTGGGCAAGGCGTTCGAGCCCGACGGCGG
CTGCAGGAAGAACTTCGACGAGTTTGTCGAGATAGTTTGTCGGGTGTGATCTTGTACTCG
TACAAATGCTTAGAACTCTATGGGACCGATTACGTGTAAGTCGACCGTCTTTTTTAAAAA
AAAAAAAAAAAA
ESTScan2.0 Prediction ( Arabidopsis model)
 
ESTScan2 CDS Prediction:
Barley1_18184 -255 1 1419 contig from HarvEST v. 1.03 assembly 25 [Hordeum vulgare]
XXTGGCGCCCCCGCCGCCGCACATCGCCGTGGTGGCCTTCCCCTTCAGCTCCCACGCGGC
CGTGCTCTTCTCGTTCGCGCgCGCCCTCGCCGCCGCCGCGCCGGCCGGGACGAGCCTCTC
GTTCCTCACCACCGCCGACAACGCCGCCCAGCTCCGCAAGGCCGGCGCXGCTCCCCGGCA
ACCTGCGCTTCGTCGAGGTCCCGGACGGGGTGCCGCCGGGCGAGACGTCGTGCCTGTCGC
CTCCGCGCCGGAtGGATCTCTTCATGGCGGCGGCCGAGGCCGGCGGGGTCAGGGTCGGGC
TCGAGGCGGCATGCGCCTCCGCCGGTGGCGCCAGGGTGAGCTGCGTCGTCGGGGACGCGT
TCGTCTGGACCGCGGACGCGGCCTCCGCTGCCGGGGCGCCGTGGGTGGCCGTCTGGACCG
CCGCTTCCTGCGCCCTCCTCGCgCACCTCCGCACCGACGCGCTCCGCCGGGACGTCGGCG
ATCAGGCGCCAGCCGAGCCGACGAGCTGCTGGTCGCGCaCGCCGGCCTCGGCGGCTACCG
CGTCCGGGACCTCCCCGACGGCGTCGTCTCCGGCGACTTCAACTACGTCATCAGCCTCCT
GGTCCACCGCCAGGCGCAGCGCCTTCCTAAAGCGGCCACGGCCGTCGCCCTCAACACCTT
CCCGGGCCTCGACCCGCCCGACCTCACCGCCGCCCTCGCCGCCGAGCTCCCGAACTGCCA
GCCCCTCGGCCCCTACCACCTCCTCCCGGGCGCAGAGCCCACAGCAGACACCAACGAAGC
GCCAGCCGACCCGCACGGCTGCCTCGCCTGGCTCGACCGCCGGCCCGCGCGGTCCGTCGC
GTACGTCAGCTTCGGCACGAACGCCACGGCGXCGGCCGGACGAGCTGCAGGAGCTCGCGG
CCGGGCTGGAGGCGAGCGGCGCGCCGTTCCTGTGGTCGCTGCGCGAGGAGTCGTGGCCGC
TGCTCCCGCCGGGGTTCCTGGAGCGCGCGCCGGGCCTCGTGGTGCCGTGGGCGCCGCAGG
TGGGCGTGCTGCGGCACGCCGCGGtCGGCGCGTTCGTGACGCACGCCGGGTGGGCGTCGG
TGATGGAGGGAGTGTCCAGCGGCGTGCCCATGGCGTGCCGGCCCTTCTTCGGCGACCAGA
CGATGAACGCGCGGTCGGTGGCCAGTGTGTGGGGCTTCGGCACGGCGTTCGACGGGCCGA
TGACGCGCGGCGCCGTGGCAAACGCGGTGGCGACGCTGCTGCGCGGGGAGGATGGGGAGC
GGATGAGGGCAAAGGCGCAGGAGCTGCAGGCCATGGTGGGCAAGGCGTTCGAGCCCGACG
GCGGCTGCAGGAAGAACTTCGACGAGTTTGTCGAXGATAGTTTGTCGGGTGTGATCTTGT
ACTCGTACAAATGCTTAGAACTCTATGGGACCGATTACGTGTAA

Protein Prediction:
GAPAAAHRRGGLPLQLPRGRALLVRAALAAAAPAGTSLSFLTTADNAAQLRKAGAAPRQP
ALRRGPGRGAAGRDVVPVASAPEDLFMAAAEAGGVRVGLEAACASAGGARVSCVVGDAFV
WTADAASAAGAPWVAVWTAASCALLATSAPTRSAGTSAIRRQPSRRAAGRAAGLGGYRVR
DLPDGVVSGDFNYVISLLVHRQAQRLPKAATAVALNTFPGLDPPDLTAALAAELPNCQPL
GPYHLLPGAEPTADTNEAPADPHGCLAWLDRRPARSVAYVSFGTNATAXAGRAAGARGRA
GGERRAVPVVAARGVVAAAPAGVPGARAGPRGAVGAAGGRAAARRGGAFVTHAGWASVME
GVSSGVPMACRPFFGDQTMNARSVASVWGFGTAFDGPMTRGAVANAVATLLRGEDGERMR
AKAQELQAMVGKAFEPDGGCRKNFDEFVXDSLSGVILYSYKCLELYGTDYV

 

 

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